Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6063

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6062: 14430 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 1549948 to 1551724 14430 mRNA_6063: 14431 - KOG0519 Sensory transduction histidine kinase, at 1552010 to 1556333 14431 mRNA_6064: 14432 - Hypothetical Protein, at 1556373 to 1558599 14432

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,551,481 + 14430 mRNA_6062 0.86 0.8
1,551,502 - 14430 mRNA_6062 0.87 1.2
1,551,610 - -1.2
1,551,633 - -0.8
1,551,641 + -0.7
1,551,651 + 0.7
1,551,652 - 0.7
1,551,792 - 0.3
1,551,800 - 0.4
1,551,806 - 2.3
1,551,812 - -2.0
1,551,933 - 0.2
1,551,948 - 0.3
1,551,953 - -0.0
1,551,964 + -0.7
1,551,965 + 0.8
1,551,965 + 2.1
1,552,019 - -1.4
1,552,024 - -0.0
1,552,025 + 2.1
1,552,026 - 0.1
1,552,031 - 1.1
1,552,031 - -0.3
1,552,035 - 0.3
1,552,035 + 0.6
1,552,036 - 1.0
1,552,036 + 0.1
1,552,040 - 0.2
1,552,040 + -1.0
1,552,043 + 1.1
1,552,043 - -3.1
1,552,045 + -0.9
1,552,057 + -0.2
1,552,125 - 0.5
1,552,193 - 0.8
1,552,199 + -1.5
1,552,200 + -1.7
1,552,840 - 14431 mRNA_6063 0.19 0.3
1,552,841 + 14431 mRNA_6063 0.19 0.2
1,553,091 + 14431 mRNA_6063 0.25 0.8
1,553,100 + 14431 mRNA_6063 0.25 1.2
1,553,244 + 14431 mRNA_6063 0.29 0.6
1,553,468 - 14431 mRNA_6063 0.34 0.1
1,553,472 - 14431 mRNA_6063 0.34 2.0
1,553,479 - 14431 mRNA_6063 0.34 -2.9
1,553,626 - 14431 mRNA_6063 0.37 0.2
1,553,856 - 14431 mRNA_6063 0.43 0.2
1,553,860 + 14431 mRNA_6063 0.43 0.6
1,553,953 + 14431 mRNA_6063 0.45 -0.6
1,553,976 - 14431 mRNA_6063 0.45 -0.6
1,554,092 - 14431 mRNA_6063 0.48 0.6
1,554,098 + 14431 mRNA_6063 0.48 -0.1
1,554,133 + 14431 mRNA_6063 0.49 -1.0
1,554,161 - 14431 mRNA_6063 0.50 0.2
1,554,272 - 14431 mRNA_6063 0.52 2.4
1,554,308 + 14431 mRNA_6063 0.53 -0.1
1,554,454 + 14431 mRNA_6063 0.57 0.0
1,554,536 - 14431 mRNA_6063 0.58 0.4
1,554,555 + 14431 mRNA_6063 0.59 0.0
1,554,576 + 14431 mRNA_6063 0.59 0.4
1,554,588 - 14431 mRNA_6063 0.60 1.3
1,554,654 + 14431 mRNA_6063 0.61 0.2
1,554,713 - 14431 mRNA_6063 0.63 1.6
1,554,765 + 14431 mRNA_6063 0.64 -0.4
1,554,831 - 14431 mRNA_6063 0.65 1.4
1,555,139 - 14431 mRNA_6063 0.72 -0.1
1,555,240 - 14431 mRNA_6063 0.75 0.6
1,555,293 - 14431 mRNA_6063 0.76 -1.2
1,555,392 - 14431 mRNA_6063 0.78 0.2
1,555,395 - 14431 mRNA_6063 0.78 0.7
1,555,395 - 14431 mRNA_6063 0.78 0.2
1,555,399 - 14431 mRNA_6063 0.78 0.2
1,555,403 - 14431 mRNA_6063 0.78 2.4
1,555,425 - 14431 mRNA_6063 0.79 0.9
1,555,490 - 14431 mRNA_6063 0.80 -0.1
1,555,547 + 14431 mRNA_6063 0.82 -1.3
1,555,592 - 14431 mRNA_6063 0.83 -0.0
1,555,695 + 14431 mRNA_6063 0.85 0.3
1,555,904 - 1.9
1,555,990 + 0.9
1,556,168 - 0.1
1,556,260 + -0.1
1,556,305 - -0.0
1,556,305 + 1.0
1,556,309 - -1.2
1,556,402 + -1.8
1,556,408 - -1.2
1,556,434 + -2.8
1,556,440 - 0.7
1,556,442 - -0.5
1,556,448 + 1.3
1,556,449 - -0.2
1,556,450 - 0.5
1,556,456 + -0.6
1,556,456 - 1.2
1,556,477 - -0.1
1,556,517 + -1.2
1,556,604 - 14432 mRNA_6064 0.10 -0.1
1,556,610 + 14432 mRNA_6064 0.11 0.9
1,556,649 - 14432 mRNA_6064 0.12 1.8
1,556,654 - 14432 mRNA_6064 0.13 0.3
1,556,655 + 14432 mRNA_6064 0.13 0.5
1,556,703 - 14432 mRNA_6064 0.15 2.0
1,556,735 - 14432 mRNA_6064 0.16 -0.4
1,556,757 - 14432 mRNA_6064 0.17 -0.9
1,556,762 - 14432 mRNA_6064 0.17 -0.8
1,556,793 - 14432 mRNA_6064 0.19 2.2
1,557,311 + 14432 mRNA_6064 0.42 1.5
1,557,322 - 14432 mRNA_6064 0.43 -2.3
1,557,323 + 14432 mRNA_6064 0.43 -0.9