Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5954

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1316839 to 1317817 14321 mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1317942 to 1318810 14322 mRNA_5955: 14323 - K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, at 1319797 to 1323881 14323

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,317,174 - 14321 mRNA_5953 0.34 -2.1
1,317,245 + 14321 mRNA_5953 0.41 0.4
1,317,335 + 14321 mRNA_5953 0.51 0.5
1,317,418 - 14321 mRNA_5953 0.59 0.1
1,317,528 - 14321 mRNA_5953 0.70 0.5
1,317,577 - 14321 mRNA_5953 0.75 -0.4
1,317,939 - 0.3
1,317,939 - -0.4
1,317,957 - 0.5
1,317,964 - -2.0
1,318,003 - 0.3
1,318,020 - -1.0
1,318,022 + 0.8
1,318,087 - 14322 mRNA_5954 0.17 0.4
1,318,100 + 14322 mRNA_5954 0.18 0.3
1,318,104 - 14322 mRNA_5954 0.19 -0.7
1,318,129 - 14322 mRNA_5954 0.22 1.3
1,318,412 - 14322 mRNA_5954 0.54 -1.3
1,318,426 + 14322 mRNA_5954 0.56 1.3
1,318,612 + 14322 mRNA_5954 0.77 -1.1
1,318,646 + 14322 mRNA_5954 0.81 -1.0
1,318,689 + 14322 mRNA_5954 0.86 -0.1
1,318,919 - -1.6
1,318,935 + -1.7
1,319,001 + -0.0
1,319,006 + -1.1
1,319,023 + -0.1
1,319,204 + -1.2
1,319,233 - -0.0
1,319,236 - -2.2
1,319,346 + 1.3
1,319,416 - 0.8
1,319,472 - -1.9
1,319,473 + 0.3
1,319,556 - -0.7
1,319,686 - 1.9
1,319,692 - -0.1