Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5913

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5912: 14280 - K11375 ELP4 elongator complex protein 4, at 1228297 to 1229962 14280 mRNA_5913: 14281 - K14455 GOT2 aspartate aminotransferase, mitochondrial, at 1230072 to 1231795 14281 mRNA_5914: 14282 - HMMPfam-Nuclear protein Es2-PF09751, at 1232293 to 1234588 14282

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,229,444 + 14280 mRNA_5912 0.69 0.3
1,229,900 + -1.6
1,229,904 + -0.6
1,230,360 + 14281 mRNA_5913 0.17 -2.0
1,230,532 + 14281 mRNA_5913 0.27 -2.6
1,230,937 - 14281 mRNA_5913 0.50 -2.4
1,230,956 + 14281 mRNA_5913 0.51 -1.8
1,230,961 + 14281 mRNA_5913 0.52 -0.9
1,231,359 - 14281 mRNA_5913 0.75 -1.8
1,231,395 + 14281 mRNA_5913 0.77 -2.2
1,231,415 - 14281 mRNA_5913 0.78 -0.3
1,231,542 - 14281 mRNA_5913 0.85 -1.8
1,231,686 - -1.4
1,231,694 - -1.7
1,231,817 + 0.8
1,231,818 - -1.3
1,231,839 - 0.2
1,231,886 - 0.5
1,231,972 - 0.8
1,231,974 - -1.4
1,231,976 - -0.2
1,231,978 - 1.8
1,231,984 - 0.1
1,231,987 + 1.6
1,231,999 + 1.8
1,232,001 + 1.2
1,232,025 - 0.5
1,232,049 - -0.2
1,232,110 - 0.1
1,232,116 - 0.5
1,232,152 + 0.2
1,232,157 - 1.6
1,232,173 + 1.1
1,232,309 + -1.9
1,232,498 + -1.0
1,232,605 + 14282 mRNA_5914 0.14 0.6