Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5874

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5873: 14241 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 1136080 to 1137305 14241 mRNA_5874: 14242 - K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, at 1138140 to 1139450 14242 mRNA_5875: 14243 - Hypothetical Protein, at 1139653 to 1140264 14243

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,137,353 + -1.4
1,137,497 + 2.1
1,137,823 + -1.4
1,138,065 + 0.8
1,138,244 + 1.3
1,138,366 - 14242 mRNA_5874 0.17 1.0
1,138,376 + 14242 mRNA_5874 0.18 1.9
1,138,512 - 14242 mRNA_5874 0.28 0.6
1,139,104 + 14242 mRNA_5874 0.74 3.3
1,139,250 + 14242 mRNA_5874 0.85 1.0
1,139,408 - 0.5
1,139,530 - 0.4
1,139,534 + -0.2
1,139,544 - 0.9
1,139,544 + 0.5
1,139,554 + -1.1
1,139,582 - -0.6
1,139,640 - 0.6
1,139,679 - 0.4
1,139,718 + 14243 mRNA_5875 0.11 1.3
1,139,719 - 14243 mRNA_5875 0.11 0.2
1,139,723 + 14243 mRNA_5875 0.11 -1.2
1,139,724 + 14243 mRNA_5875 0.12 1.2
1,139,726 - 14243 mRNA_5875 0.12 1.5
1,139,754 + 14243 mRNA_5875 0.17 1.4
1,139,845 + 14243 mRNA_5875 0.31 0.7
1,139,860 - 14243 mRNA_5875 0.34 -0.5
1,139,863 - 14243 mRNA_5875 0.34 0.2
1,139,867 - 14243 mRNA_5875 0.35 1.3
1,139,868 - 14243 mRNA_5875 0.35 -0.8
1,139,873 + 14243 mRNA_5875 0.36 0.2
1,139,994 + 14243 mRNA_5875 0.56 -0.3
1,140,013 + 14243 mRNA_5875 0.59 1.1
1,140,014 - 14243 mRNA_5875 0.59 1.0
1,140,018 - 14243 mRNA_5875 0.60 -1.7
1,140,018 + 14243 mRNA_5875 0.60 -1.0
1,140,022 - 14243 mRNA_5875 0.60 1.5
1,140,022 + 14243 mRNA_5875 0.60 1.8
1,140,023 - 14243 mRNA_5875 0.60 -1.7
1,140,035 - 14243 mRNA_5875 0.62 1.1
1,140,046 + 14243 mRNA_5875 0.64 -0.3
1,140,049 + 14243 mRNA_5875 0.65 0.7
1,140,140 - 14243 mRNA_5875 0.80 -0.4
1,140,144 + 14243 mRNA_5875 0.80 1.6
1,140,170 + 14243 mRNA_5875 0.84 -0.4
1,140,178 - 14243 mRNA_5875 0.86 2.2
1,140,178 - 14243 mRNA_5875 0.86 0.7
1,140,182 + 14243 mRNA_5875 0.86 2.0
1,140,191 - 14243 mRNA_5875 0.88 1.3
1,140,196 + 14243 mRNA_5875 0.89 -0.8
1,140,196 + 14243 mRNA_5875 0.89 -0.4
1,140,198 - 14243 mRNA_5875 0.89 0.2
1,140,199 + 14243 mRNA_5875 0.89 -0.7
1,140,201 - 14243 mRNA_5875 0.90 0.2
1,140,205 + 0.7
1,140,206 - -0.2
1,140,207 + 0.8
1,140,209 + 0.4
1,140,209 + -0.1
1,140,221 - -0.4
1,140,224 - 0.1
1,140,227 - -2.2
1,140,361 + 0.6
1,140,392 + -0.5
1,140,443 - -1.2