Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5851

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5850: 14218 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1082825 to 1084341 14218 mRNA_5851: 14219 - SUPERFAMILY--SSF51735, at 1084885 to 1085792 14219 mRNA_5852: 14220 - K14856 SDA1, SDAD1 protein SDA1, at 1085996 to 1089150 14220

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,083,971 - 14218 mRNA_5850 0.76 1.0
1,084,407 - 0.9
1,084,556 + -1.1
1,084,556 + 0.5
1,084,582 + -0.1
1,084,590 - 1.5
1,084,599 + -0.7
1,084,699 + 0.1
1,084,743 + 1.8
1,084,863 - -1.0
1,085,121 - 14219 mRNA_5851 0.26 -0.5
1,085,173 + 14219 mRNA_5851 0.32 0.3
1,085,747 + -0.2
1,085,898 + -1.3
1,085,926 + -0.5
1,085,927 - -2.8
1,085,934 + 0.2
1,085,945 + -0.6