Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5771

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904277 to 904949 14138 mRNA_5771: 14139 - K00921 PIKFYVE, FAB1 1-phosphatidylinositol-3-phosphate 5-kinase, at 905200 to 913412 14139 mRNA_5772: 14140 - BLAST m serotype precursor [Moniliophthora roreri MCA 2..., at 913489 to 916106 14140

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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904,209 - -1.3
904,233 + 2.0
904,253 + 0.2
904,257 - -0.5
904,825 + 14138 mRNA_5770 0.81 0.0
905,086 - -1.7
905,268 + 1.1
905,273 - 0.8
905,294 + 0.9
905,437 + -1.4
905,522 + 1.7
905,524 - 0.2
905,794 - -1.6
905,834 - 1.4
906,005 + -1.3
906,113 + 14139 mRNA_5771 0.11 -1.0
906,115 - 14139 mRNA_5771 0.11 -1.6
906,301 + 14139 mRNA_5771 0.13 -0.2
906,323 + 14139 mRNA_5771 0.14 -1.2
906,415 - 14139 mRNA_5771 0.15 0.6
906,581 - 14139 mRNA_5771 0.17 0.4
906,585 - 14139 mRNA_5771 0.17 -1.0
906,601 + 14139 mRNA_5771 0.17 -1.3
906,755 - 14139 mRNA_5771 0.19 0.6
907,289 - 14139 mRNA_5771 0.25 -1.1
907,441 - 14139 mRNA_5771 0.27 -0.6
909,786 + 14139 mRNA_5771 0.56 0.6
909,828 - 14139 mRNA_5771 0.56 0.5
909,829 + 14139 mRNA_5771 0.56 -0.5
910,412 + 14139 mRNA_5771 0.63 -0.8
910,572 + 14139 mRNA_5771 0.65 -0.1
910,972 - 14139 mRNA_5771 0.70 -0.3
911,060 - 14139 mRNA_5771 0.71 1.2
913,321 - 0.9
913,338 - 0.1
913,346 - 0.7
913,658 + 1.1
914,215 + 14140 mRNA_5772 0.28 -0.7
914,245 + 14140 mRNA_5772 0.29 0.5
914,411 - 14140 mRNA_5772 0.35 -0.3