Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5745

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834713 to 839482 14112 mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840305 to 845790 14113

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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839,637 - 0.1
839,640 - -0.6
839,807 - 1.7
839,809 - 0.1
839,813 + -0.8
839,822 + -0.3
839,822 + 0.7
839,825 + -0.1
839,828 + 0.7
839,840 + -1.2
839,842 + -0.2
839,842 + 0.3
839,843 - 0.5
839,848 + -0.0
839,852 + -0.1
839,852 + 0.5
839,853 - 0.9
839,988 - 0.6
839,998 + -0.4
840,000 - 0.6
840,011 - -0.1
840,125 - 0.4
840,142 - 1.0
840,144 - -0.1
840,148 + 0.4
840,150 + -0.1
840,300 + -0.8
840,318 + -0.3
841,610 + 14113 mRNA_5745 0.24 2.5
842,016 - 14113 mRNA_5745 0.31 0.6
842,043 + 14113 mRNA_5745 0.32 -0.3
843,148 + 14113 mRNA_5745 0.52 -0.5
844,098 + 14113 mRNA_5745 0.69 -2.4
844,571 - 14113 mRNA_5745 0.78 1.6
844,750 + 14113 mRNA_5745 0.81 3.1
845,124 - 14113 mRNA_5745 0.88 0.9
846,024 - -1.2
846,051 + -1.2
846,072 - 1.6
846,074 + -2.4
846,157 - -0.8
846,169 - 0.0
846,196 + -0.7
846,200 + -0.6
846,200 - 0.8
846,215 + 0.1
846,255 + -2.5
846,287 + 1.0
846,306 - 1.7
846,330 + 0.1
846,490 - -0.0
846,503 + 0.6
846,641 + -0.5
846,777 + 0.3
846,777 + 1.3
846,777 - 2.0