Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5738

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5737: 14105 - HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 814354 to 815055 14105 mRNA_5738: 14106 - SUPERFAMILY--SSF54928, at 815382 to 817330 14106 mRNA_5739: 14107 - K05692 ACTB_G1 actin beta/gamma 1, at 818147 to 820488 14107

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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814,648 - 14105 mRNA_5737 0.42 -1.0
814,785 - 14105 mRNA_5737 0.61 -2.1
814,951 - 14105 mRNA_5737 0.85 -1.0
815,116 + 0.6
815,144 - -2.0
815,592 - 14106 mRNA_5738 0.11 -2.0
816,303 - 14106 mRNA_5738 0.47 0.2
817,293 - -2.0
817,439 - -1.4
817,441 + 0.5
817,449 - -2.8
817,455 + -2.1
817,470 + -1.8
817,603 - -0.2
817,604 - -0.2
817,613 + -0.8
817,619 - 0.3
817,621 + -1.8
817,785 + -1.5
817,879 - -0.4
817,882 - -0.7
817,886 + -1.1
817,894 + -1.5
817,909 + -0.2
817,909 - 1.2
817,913 - 1.6
817,914 + 0.2
817,917 + 0.5
817,925 + -1.4
818,033 + -0.2
818,044 - -0.0
818,050 - 0.2
818,051 - 2.1
818,052 + -0.2
818,053 + -1.0
818,055 + -1.5
818,065 - 0.8
818,081 + -0.8
818,083 - 0.3