Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5720

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765726 to 767088 14087 mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767473 to 768381 14088 mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768732 to 770042 14089

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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767,145 - 1.8
767,293 - 1.0
767,300 + 1.1
767,306 + 2.6
767,440 + 3.2
767,443 - 0.4
767,443 - 1.2
767,477 + 3.9
767,480 + 0.7
767,591 - 14088 mRNA_5720 0.13 1.9
767,596 + 14088 mRNA_5720 0.14 3.8
767,600 + 14088 mRNA_5720 0.14 3.4
767,602 + 14088 mRNA_5720 0.14 3.1
767,605 - 14088 mRNA_5720 0.15 2.4
767,635 + 14088 mRNA_5720 0.18 2.7
768,751 - -0.1
769,199 - 14089 mRNA_5721 0.36 -0.9
769,237 + 14089 mRNA_5721 0.39 1.1