Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5694

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704894 to 706050 14061 mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706295 to 707436 14062 mRNA_5695: 14063 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 708061 to 710208 14063

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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705,309 - 14061 mRNA_5693 0.36 -2.0
705,625 - 14061 mRNA_5693 0.63 -2.2
705,655 - 14061 mRNA_5693 0.66 -3.2
705,786 - 14061 mRNA_5693 0.77 -2.3
705,788 + 14061 mRNA_5693 0.77 -2.3
705,819 + 14061 mRNA_5693 0.80 -3.5
706,022 + 1.8
706,083 + 1.1
706,209 - 0.3
706,213 - 0.4
706,221 - -0.2
706,222 + -2.4
706,244 + 0.5
706,256 - 0.2
706,260 - -0.1
706,262 + 0.7
706,392 + -0.3
706,404 + 1.1
706,422 + 14062 mRNA_5694 0.11 0.4
706,433 + 14062 mRNA_5694 0.12 -0.1
706,435 + 14062 mRNA_5694 0.12 -0.1
706,860 + 14062 mRNA_5694 0.49 -1.0
706,872 - 14062 mRNA_5694 0.51 1.1
707,415 + 0.1
707,464 - 1.3
707,560 + 0.2
707,595 - -0.8
707,622 - 0.0
707,724 - -1.0
707,893 - -1.6
707,896 - -2.3
707,927 + -1.2
708,042 - -1.9
708,216 - -1.3
708,266 - -1.1
708,352 + 14063 mRNA_5695 0.14 -1.1