Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5655

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023 mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615931 to 617472 14024

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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606,899 - 14022 mRNA_5654 0.71 -2.1
607,001 - 14022 mRNA_5654 0.76 -3.5
607,063 + 14022 mRNA_5654 0.78 -3.1
607,108 - 14022 mRNA_5654 0.80 -2.9
607,157 + 14022 mRNA_5654 0.82 -1.6
607,184 - 14022 mRNA_5654 0.83 -4.6
607,186 + 14022 mRNA_5654 0.83 -2.8
607,205 + 14022 mRNA_5654 0.84 -4.3
607,206 + 14022 mRNA_5654 0.84 -1.8
607,207 - 14022 mRNA_5654 0.84 -1.5
607,208 - 14022 mRNA_5654 0.84 -2.3
607,209 + 14022 mRNA_5654 0.84 -3.0
607,352 + -0.6
607,518 - -3.5
607,643 - -2.7
607,646 + -2.5
607,648 - -2.6
607,653 + -2.9
607,656 + -4.4
607,659 + -1.4
607,659 + -2.6
607,661 - -3.0
607,668 - -4.6
607,668 - -2.2
607,669 - -1.4
607,671 + -2.8
607,673 - -4.2
607,680 + -0.6
607,681 + -4.5
607,684 - 0.0
607,690 + -0.6
607,709 + -1.4
607,760 + -0.0
607,763 + 1.2
607,769 + -0.6
607,770 - -0.8
607,786 + 0.5
607,818 - -1.0
607,821 + -1.4
607,827 - -2.8
607,853 - -2.3
608,735 + 14023 mRNA_5655 0.12 -2.3
608,798 - 14023 mRNA_5655 0.13 -2.7
609,616 - 14023 mRNA_5655 0.24 0.7
609,788 - 14023 mRNA_5655 0.27 -1.3
609,901 + 14023 mRNA_5655 0.28 -1.3
610,009 + 14023 mRNA_5655 0.30 -1.1
610,221 + 14023 mRNA_5655 0.32 0.2
610,322 + 14023 mRNA_5655 0.34 -2.9
610,874 + 14023 mRNA_5655 0.41 -1.4
610,946 - 14023 mRNA_5655 0.42 -3.3
611,927 + 14023 mRNA_5655 0.55 -2.3
612,091 - 14023 mRNA_5655 0.57 -0.8
612,674 + 14023 mRNA_5655 0.65 -1.0
612,851 + 14023 mRNA_5655 0.68 -1.6
613,163 - 14023 mRNA_5655 0.72 0.8
613,979 - 14023 mRNA_5655 0.83 1.4
613,985 - 14023 mRNA_5655 0.83 -0.1
614,151 - 14023 mRNA_5655 0.85 -2.1
614,446 - 14023 mRNA_5655 0.89 -0.0
614,556 - 1.9
614,585 - 0.0
614,758 - -1.8
615,316 + 1.0
615,343 + -0.6
615,347 + 0.6
615,464 - -0.1
615,511 - 0.3
615,514 + -0.1
615,516 + 1.0
615,529 - -2.4
615,653 - -0.3