Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5628

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539729 to 541360 13995 mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541523 to 547167 13996 mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547536 to 549644 13997

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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541,416 - -1.4
541,421 + -0.8
541,421 + -1.0
541,421 + -1.6
541,421 + -0.5
541,435 - 0.8
541,455 + 0.4
541,543 - 0.2
541,567 + 0.1
541,582 + -0.1
541,729 - 0.0
541,754 + 1.1
541,847 + 0.4
541,862 - -1.0
541,893 - 1.2
541,900 - -0.8
542,004 + 2.7
542,149 + 13996 mRNA_5628 0.11 -1.4
542,191 + 13996 mRNA_5628 0.12 -0.6
542,584 - 13996 mRNA_5628 0.19 0.7
542,708 + 13996 mRNA_5628 0.21 -0.3
542,730 + 13996 mRNA_5628 0.21 0.2
543,167 + 13996 mRNA_5628 0.29 -0.3
543,208 + 13996 mRNA_5628 0.30 0.6
543,638 + 13996 mRNA_5628 0.37 1.0
543,677 + 13996 mRNA_5628 0.38 0.0
543,830 - 13996 mRNA_5628 0.41 -0.7
544,249 - 13996 mRNA_5628 0.48 0.2
544,439 - 13996 mRNA_5628 0.52 -1.1
544,494 - 13996 mRNA_5628 0.53 -0.4
544,938 + 13996 mRNA_5628 0.60 -0.1
544,977 + 13996 mRNA_5628 0.61 -1.1
545,122 + 13996 mRNA_5628 0.64 -0.4
545,318 - 13996 mRNA_5628 0.67 -2.6
545,504 + 13996 mRNA_5628 0.71 0.7
545,522 - 13996 mRNA_5628 0.71 0.2
545,601 + 13996 mRNA_5628 0.72 1.3
545,860 - 13996 mRNA_5628 0.77 -0.9
546,145 - 13996 mRNA_5628 0.82 0.6
546,222 + 13996 mRNA_5628 0.83 -0.6
546,301 + 13996 mRNA_5628 0.85 1.0
546,586 - 13996 mRNA_5628 0.90 -0.4
546,588 + 13996 mRNA_5628 0.90 -2.4
546,603 + 0.7
546,737 - 2.4
546,885 + 2.0
546,985 - 0.2
547,313 + 0.6
547,328 - -0.6
547,340 + 0.2
547,379 + 0.8
547,464 - -0.5
547,473 - 0.5
547,476 - -0.0
547,478 + -0.2
547,521 - -1.4
547,627 - 0.3
547,787 - 13997 mRNA_5629 0.12 -0.3
547,909 + 13997 mRNA_5629 0.18 0.9
547,918 - 13997 mRNA_5629 0.18 0.5
548,058 - 13997 mRNA_5629 0.25 0.3
548,090 + 13997 mRNA_5629 0.26 -1.5
548,109 - 13997 mRNA_5629 0.27 0.2