Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5621

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5620: 13988 - HMMPfam-GRF zinc finger-PF06839, at 528663 to 529956 13988 mRNA_5621: 13989 - Hypothetical Protein, at 530337 to 531503 13989 mRNA_5622: 13990 - K00849 galK galactokinase, at 531659 to 534063 13990

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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529,954 - -1.0
529,955 + 0.4
529,957 + -1.2
529,966 - -1.1
530,050 + 2.6
530,081 - 1.2
530,082 + -0.2
530,083 + 0.9
530,136 + 1.7
531,002 + 13989 mRNA_5621 0.57 -2.1
531,108 - 13989 mRNA_5621 0.66 -0.5
531,251 + 13989 mRNA_5621 0.78 -1.8
531,372 - 13989 mRNA_5621 0.89 -1.2
531,393 + -0.2
531,404 + -0.3
531,404 + -0.3
531,563 - -1.8
531,663 - 1.2
531,664 + -4.5
531,673 - 0.6
531,679 + -0.0
531,679 - 0.0
531,690 - -2.5
531,698 - -0.5
531,700 + -0.5
531,822 - -0.1
531,841 + 0.3
531,881 - -0.6
531,914 - 13990 mRNA_5622 0.11 0.8
531,958 - 13990 mRNA_5622 0.12 -1.5
531,961 - 13990 mRNA_5622 0.13 0.6
531,970 + 13990 mRNA_5622 0.13 0.2
531,979 - 13990 mRNA_5622 0.13 -1.7
531,983 - 13990 mRNA_5622 0.13 0.4
531,984 + 13990 mRNA_5622 0.14 2.4
531,987 - 13990 mRNA_5622 0.14 -2.4
532,002 + 13990 mRNA_5622 0.14 -0.3
532,003 + 13990 mRNA_5622 0.14 0.0
532,127 - 13990 mRNA_5622 0.19 1.0
532,142 - 13990 mRNA_5622 0.20 0.7
532,291 - 13990 mRNA_5622 0.26 0.5
532,424 - 13990 mRNA_5622 0.32 -0.5