Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5610

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507663 to 510497 13979

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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503,891 + 13977 mRNA_5609 0.71 3.5
503,903 + 13977 mRNA_5609 0.71 1.7
504,176 - 13977 mRNA_5609 0.83 -1.5
504,191 - 13977 mRNA_5609 0.83 -2.0
504,191 - 13977 mRNA_5609 0.83 0.2
504,222 + 13977 mRNA_5609 0.85 1.2
504,286 + 13977 mRNA_5609 0.87 -1.8
505,095 + 13978 mRNA_5610 0.16 0.6
505,536 + 13978 mRNA_5610 0.32 -0.2
505,650 - 13978 mRNA_5610 0.36 0.8
505,711 - 13978 mRNA_5610 0.38 -1.1
505,801 + 13978 mRNA_5610 0.41 0.3
505,801 + 13978 mRNA_5610 0.41 -0.8
505,805 - 13978 mRNA_5610 0.42 -0.5
505,811 + 13978 mRNA_5610 0.42 -1.4
506,099 + 13978 mRNA_5610 0.52 1.1
506,109 - 13978 mRNA_5610 0.53 0.2
506,111 - 13978 mRNA_5610 0.53 0.6
506,136 + 13978 mRNA_5610 0.54 1.9
506,372 + 13978 mRNA_5610 0.62 -0.1
506,443 - 13978 mRNA_5610 0.65 -0.1
506,565 + 13978 mRNA_5610 0.69 0.6
506,820 + 13978 mRNA_5610 0.79 0.9
506,991 + 13978 mRNA_5610 0.85 -0.8
507,001 + 13978 mRNA_5610 0.85 0.9
507,269 - 1.1
507,284 - 0.3
507,292 + 0.3
507,378 + -0.7
507,570 - 0.3
507,594 + -0.9
507,611 - 0.6
508,178 - 13979 mRNA_5611 0.18 1.3