Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5594

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961 mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465150 to 466141 13962 mRNA_5595: 13963 - K11294 NCL, NSR1 nucleolin, at 466415 to 467468 13963

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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464,184 + 13961 mRNA_5593 0.60 0.0
464,274 + 13961 mRNA_5593 0.65 -1.8
464,286 + 13961 mRNA_5593 0.66 -0.6
464,289 - 13961 mRNA_5593 0.66 -0.4
464,345 - 13961 mRNA_5593 0.69 0.9
464,609 + 13961 mRNA_5593 0.84 0.9
464,645 + 13961 mRNA_5593 0.86 0.4
464,779 - -0.3
464,800 + -1.5
464,898 + 1.7
464,917 - -1.9
464,925 + 0.2
464,926 + -0.1
464,928 + -0.1
464,931 - 0.6
464,935 - -0.6
464,952 - 0.9
465,074 - -0.4
465,084 + -0.7
465,087 + -0.3
465,098 + -0.7
465,217 + 0.7
465,232 + -0.3
465,941 + 13962 mRNA_5594 0.80 1.8
465,949 + 13962 mRNA_5594 0.81 -0.5
466,084 + -1.1
466,092 + 1.8
466,221 + 1.9
466,226 + 2.9
466,350 - 0.1
466,371 - 0.8
466,374 + -0.0
466,386 + 0.7
466,409 + 0.3
466,517 + 0.4