Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5581

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424310 to 425729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426490 to 430753 13949 mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431120 to 432974 13950

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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425,746 + -0.1
425,965 + -1.4
425,976 + 0.5
425,989 + 0.5
426,023 - -0.3
426,063 + -1.1
426,089 + -0.7
426,092 - 1.3
426,101 + -1.9
426,108 - 1.3
426,117 - 1.5
426,117 - 0.7
426,117 + -0.7
426,120 - -0.4
426,126 - 2.0
426,129 - -1.1
426,133 + -0.2
426,141 - 0.2
426,142 - 0.1
426,146 + 2.0
426,147 - 1.0
426,150 + -2.1
426,150 - -0.9
426,156 + 0.1
426,157 - 1.1
426,161 - -1.8
426,163 + 1.7
426,166 + -1.3
426,171 - -0.6
426,177 + -0.1
426,200 + 0.8
426,305 - 0.8
426,313 - -0.3
426,331 + -0.7
426,352 + 0.1
426,465 - 0.1
426,491 + -0.2
426,494 - 0.2
426,619 + -0.8
426,646 - 3.6
426,893 + 0.6
427,045 - 13949 mRNA_5581 0.13 0.6
427,202 + 13949 mRNA_5581 0.17 0.5
427,507 + 13949 mRNA_5581 0.24 2.3
427,859 + 13949 mRNA_5581 0.32 1.8
428,081 + 13949 mRNA_5581 0.37 -0.7
428,846 - 13949 mRNA_5581 0.55 -0.5
428,853 + 13949 mRNA_5581 0.55 -1.3
428,926 - 13949 mRNA_5581 0.57 -1.7
429,055 - 13949 mRNA_5581 0.60 0.4
430,334 - 0.8
430,820 + -0.9
430,983 - -0.0
431,582 - 13950 mRNA_5582 0.25 0.7