Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5566

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5565: 13933 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 391659 to 392676 13933 mRNA_5566: 13934 - Hypothetical Protein, at 393012 to 395471 13934 mRNA_5567: 13935 - K14394 ACP1 low molecular weight phosphotyrosine protein phosphatase, at 395599 to 396422 13935

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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392,023 - 13933 mRNA_5565 0.36 -0.1
392,057 - 13933 mRNA_5565 0.39 0.3
392,071 - 13933 mRNA_5565 0.40 1.1
392,497 + 13933 mRNA_5565 0.82 0.5
392,511 + 13933 mRNA_5565 0.84 -3.8
392,629 - -4.1
392,941 + -3.1
393,064 + -0.5
393,082 - -0.8
393,222 - -0.1
393,224 + 2.6
393,242 - -0.8
393,386 + 13934 mRNA_5566 0.15 0.9
393,442 - 13934 mRNA_5566 0.17 -0.5
393,843 + 13934 mRNA_5566 0.34 -1.3
393,980 - 13934 mRNA_5566 0.39 0.7
393,980 - 13934 mRNA_5566 0.39 -1.5
393,985 + 13934 mRNA_5566 0.40 -2.8
393,987 + 13934 mRNA_5566 0.40 -1.5
394,290 - 13934 mRNA_5566 0.52 1.3
394,553 - 13934 mRNA_5566 0.63 -0.4
394,821 - 13934 mRNA_5566 0.74 -0.8
394,849 + 13934 mRNA_5566 0.75 -0.7
395,212 - 13934 mRNA_5566 0.89 1.1
395,307 - 0.9
395,313 + 0.6
395,575 + -0.2
395,624 - -0.5
395,742 + 13935 mRNA_5567 0.17 -0.8
395,762 + 13935 mRNA_5567 0.20 2.6
395,866 - 13935 mRNA_5567 0.32 -0.3
396,022 - 13935 mRNA_5567 0.51 0.1
396,281 - 13935 mRNA_5567 0.83 -0.7
396,289 - 13935 mRNA_5567 0.84 -0.2
396,444 + -0.2
396,444 - -1.1
396,461 - -2.8
396,468 - 0.1