Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5564

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385624 to 387371 13931 mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387473 to 390458 13932

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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387,517 + 0.3
387,517 - 0.3
387,622 + -1.9
387,951 - 13932 mRNA_5564 0.16 0.7
388,072 - 13932 mRNA_5564 0.20 0.9
388,402 - 13932 mRNA_5564 0.31 -1.3
388,457 + 13932 mRNA_5564 0.33 -0.3
388,476 - 13932 mRNA_5564 0.34 -0.7
388,622 + 13932 mRNA_5564 0.38 1.7
388,809 - 13932 mRNA_5564 0.45 -1.6
388,856 + 13932 mRNA_5564 0.46 0.3
388,937 - 13932 mRNA_5564 0.49 1.1
389,009 + 13932 mRNA_5564 0.51 -0.8
389,301 + 13932 mRNA_5564 0.61 0.6
389,550 - 13932 mRNA_5564 0.70 -0.6
389,606 - 13932 mRNA_5564 0.71 0.5
389,824 + 13932 mRNA_5564 0.79 -0.7
389,873 + 13932 mRNA_5564 0.80 0.9
390,281 - 0.8
390,607 - 0.1
390,768 - 1.9
391,031 + -0.5
391,042 - -0.3
391,195 + 1.6
391,195 + 0.5
391,305 + -2.1
391,306 + 0.9
391,319 - 0.1
391,326 + -1.2
391,328 - 1.5
391,343 - -0.6
391,381 - 0.9
391,401 + 0.2
391,401 + 1.4
391,419 - -1.0
391,420 - 0.0
391,438 + 1.6
391,447 - 0.0
391,454 - -1.0
391,454 - -0.1