Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5558

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5557: 13925 - K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, at 375495 to 376430 13925 mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376866 to 377685 13926 mRNA_5559: 13927 - KOG2406 MADS box transcription factor, at 377772 to 380881 13927

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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375,894 + 13925 mRNA_5557 0.43 -1.7
376,039 + 13925 mRNA_5557 0.58 -2.1
376,176 - 13925 mRNA_5557 0.73 -1.7
376,182 - 13925 mRNA_5557 0.73 -2.8
376,191 + 13925 mRNA_5557 0.74 -3.3
376,192 + 13925 mRNA_5557 0.74 -1.5
376,192 + 13925 mRNA_5557 0.74 -0.5
376,201 + 13925 mRNA_5557 0.75 -2.8
376,329 - 13925 mRNA_5557 0.89 -2.2
376,496 + -1.4
376,500 - -0.8
376,613 - -0.2
376,737 + -0.9
376,750 - 0.2
376,751 + -1.9
376,754 - -0.6
376,771 + -2.6
376,771 + 1.7
376,772 + 1.4
376,776 - -0.7
376,912 - -0.4
376,928 + 0.2
376,963 - 13926 mRNA_5558 0.12 0.2
377,207 - 13926 mRNA_5558 0.42 -0.6
377,212 + 13926 mRNA_5558 0.42 -0.9
377,422 + 13926 mRNA_5558 0.68 -0.5
377,540 - 13926 mRNA_5558 0.82 0.6