Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5557

Experiments: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5556: 13924 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 374231 to 375171 13924 mRNA_5557: 13925 - K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, at 375495 to 376430 13925 mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376866 to 377685 13926

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
375,110 - -1.4
375,255 - 1.5
375,274 - -1.0
375,280 - -1.7
375,283 - 0.7
375,289 + 0.8
375,290 - 1.7
375,448 - 0.7
375,553 - -2.7
375,586 - -3.2
375,695 - 13925 mRNA_5557 0.21 -1.4
375,718 + 13925 mRNA_5557 0.24 -2.4
375,894 + 13925 mRNA_5557 0.43 -1.7
376,039 + 13925 mRNA_5557 0.58 -2.1
376,176 - 13925 mRNA_5557 0.73 -1.7
376,182 - 13925 mRNA_5557 0.73 -2.8
376,191 + 13925 mRNA_5557 0.74 -3.3
376,192 + 13925 mRNA_5557 0.74 -1.5
376,192 + 13925 mRNA_5557 0.74 -0.5
376,201 + 13925 mRNA_5557 0.75 -2.8
376,329 - 13925 mRNA_5557 0.89 -2.2
376,496 + -1.4
376,500 - -0.8
376,613 - -0.2
376,737 + -0.9
376,750 - 0.2
376,751 + -1.9
376,754 - -0.6
376,771 + -2.6
376,771 + 1.7
376,772 + 1.4
376,776 - -0.7
376,912 - -0.4
376,928 + 0.2
376,963 - 13926 mRNA_5558 0.12 0.2
377,207 - 13926 mRNA_5558 0.42 -0.6
377,212 + 13926 mRNA_5558 0.42 -0.9
377,422 + 13926 mRNA_5558 0.68 -0.5