Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5555

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5554: 13922 - KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily, at 364686 to 369253 13922 mRNA_5555: 13923 - K19984 EXOC5, SEC10 exocyst complex component 5, at 369453 to 373843 13923 mRNA_5556: 13924 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 374231 to 375171 13924

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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369,135 + 0.3
369,254 + -0.1
369,260 + -0.7
369,268 + -1.3
369,275 - -0.1
369,275 - -0.8
369,288 + 0.7
369,294 + 0.1
371,866 - 13923 mRNA_5555 0.55 2.8
372,614 - 13923 mRNA_5555 0.72 0.3
373,395 - 13923 mRNA_5555 0.90 0.8
373,674 - 0.9
373,943 + -0.3
373,970 + 0.6
374,081 + -1.6