Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5548

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5547: 13915 - K08994 yneE putative membrane protein, at 344428 to 346193 13915 mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346631 to 348391 13916 mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349196 to 351953 13917

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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345,869 + 13915 mRNA_5547 0.82 -1.6
345,924 - 13915 mRNA_5547 0.85 -0.1
346,758 + 3.4
346,759 + 0.8
346,872 + 13916 mRNA_5548 0.14 2.2
348,259 + 1.1
348,390 + 2.2
348,436 + 1.9
348,561 - 0.7
348,592 + 0.7
348,705 - 1.5
348,713 - -2.0
348,723 + 1.0
348,727 + -0.3
348,727 + 0.2
348,730 + 0.3
348,730 - 0.7
348,730 + 0.3
348,733 - 1.3
348,735 - -0.0
348,739 - 0.4
348,875 - 2.8
348,877 - 1.5
348,896 - -0.4
349,034 - 0.9
349,045 - 0.8
349,148 + 0.1
349,164 + -0.1
349,171 + 1.3
349,177 - -1.4
349,186 + 0.9
349,309 - -0.9
349,320 + 0.6