Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5541

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5540: 13908 - Interpro GDP-fucose protein O-fucosyltransferase, at 330944 to 333027 13908 mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333432 to 336799 13909 mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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332,811 + 13908 mRNA_5540 0.90 2.7
332,923 + 1.8
332,978 + 0.5
333,094 - 0.4
333,219 + -0.1
333,222 + 1.6
333,255 + 0.4
333,261 - 0.6
333,261 - -0.7
333,271 - -1.7
333,279 + 0.4
333,335 + 0.1
333,339 - 0.3
333,343 - -0.8
333,352 - -0.6
333,355 - -0.2
333,356 + 1.0
333,361 + 0.2
333,361 - 0.6
333,362 + -1.8
333,372 + -1.5
333,379 - -0.8
333,383 + 0.3
333,405 - 1.0
333,407 + 0.9
333,443 - 1.0
333,485 - -0.1
333,542 + 0.5
333,575 - -0.6
333,580 - -0.5
333,683 - 1.5
333,699 + 0.6
333,853 - 13909 mRNA_5541 0.12 0.4
334,432 - 13909 mRNA_5541 0.30 -1.4
334,585 + 13909 mRNA_5541 0.34 1.1
334,861 + 13909 mRNA_5541 0.42 -0.1
335,002 - 13909 mRNA_5541 0.47 -0.1
335,524 + 13909 mRNA_5541 0.62 1.8
335,685 + 13909 mRNA_5541 0.67 -0.9
335,794 - 13909 mRNA_5541 0.70 -0.8
335,924 + 13909 mRNA_5541 0.74 -0.0
335,951 + 13909 mRNA_5541 0.75 0.7
335,996 - 13909 mRNA_5541 0.76 -0.5
336,027 - 13909 mRNA_5541 0.77 0.5
336,279 - 13909 mRNA_5541 0.85 0.2
336,469 - -0.2
336,621 - 0.7
336,625 + 2.2
336,705 + -1.3
337,012 - -0.1
337,205 - 13910 mRNA_5542 0.17 -1.1
337,213 + 13910 mRNA_5542 0.18 2.0
337,320 - 13910 mRNA_5542 0.26 0.1
337,354 - 13910 mRNA_5542 0.28 1.0
337,501 - 13910 mRNA_5542 0.39 -1.5
337,508 + 13910 mRNA_5542 0.40 -0.1