Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5535

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315936 to 317983 13902 mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318348 to 322384 13903 mRNA_5536: 13904 - Hypothetical Protein, at 322636 to 323526 13904

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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317,541 + 13902 mRNA_5534 0.78 -1.0
317,550 - 13902 mRNA_5534 0.79 0.5
317,558 + 13902 mRNA_5534 0.79 -0.7
317,562 + 13902 mRNA_5534 0.79 -0.8
317,699 + 13902 mRNA_5534 0.86 -0.9
317,722 - 13902 mRNA_5534 0.87 -1.5
317,741 - 13902 mRNA_5534 0.88 0.2
317,855 + -0.9
318,012 + 2.0
318,028 - -0.1
318,029 + -0.3
318,033 + 0.2
318,042 + -1.6
318,046 + -1.0
318,173 - 0.1
318,304 - 0.4
318,310 + 0.6
318,313 + -1.0
318,313 + 1.5
318,562 + 0.5
319,366 - 13903 mRNA_5535 0.25 -2.3
319,640 + 13903 mRNA_5535 0.32 0.1
319,949 + 13903 mRNA_5535 0.40 0.3
320,227 - 13903 mRNA_5535 0.47 -0.4
320,398 - 13903 mRNA_5535 0.51 1.5
320,521 + 13903 mRNA_5535 0.54 1.0
320,658 - 13903 mRNA_5535 0.57 0.8
320,682 + 13903 mRNA_5535 0.58 0.9
320,983 - 13903 mRNA_5535 0.65 2.1
321,244 - 13903 mRNA_5535 0.72 2.8
321,437 + 13903 mRNA_5535 0.77 2.0
321,550 - 13903 mRNA_5535 0.79 0.2
321,660 + 13903 mRNA_5535 0.82 2.1
321,706 - 13903 mRNA_5535 0.83 1.4
321,938 - 13903 mRNA_5535 0.89 1.5
321,950 - 13903 mRNA_5535 0.89 0.5
322,217 + 0.0
322,388 + -0.3
322,567 + -0.2
322,859 + 13904 mRNA_5536 0.25 0.1
323,160 + 13904 mRNA_5536 0.59 0.7
323,280 - 13904 mRNA_5536 0.72 -0.2