Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5533

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5532: 13900 - K01519 ITPA inosine triphosphate pyrophosphatase, at 312608 to 313852 13900 mRNA_5533: 13901 - Hypothetical Protein, at 314025 to 315738 13901 mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315936 to 317983 13902

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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313,061 + 13900 mRNA_5532 0.36 -1.5
313,348 + 13900 mRNA_5532 0.59 0.2
313,645 + 13900 mRNA_5532 0.83 0.2
313,756 + 2.0
313,987 + 1.3
314,515 + 13901 mRNA_5533 0.29 -0.7
314,781 + 13901 mRNA_5533 0.44 0.6
314,795 + 13901 mRNA_5533 0.45 -1.6
315,832 + -0.4
315,836 + -1.7
315,843 + 2.0
315,973 - -1.2
316,083 - -1.5
316,107 + 0.5
316,119 - -0.3
316,121 + -0.0
316,550 + 13902 mRNA_5534 0.30 1.0