Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5462

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144867 to 148106 13829 mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150414 to 154047 13831

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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147,492 - 13829 mRNA_5461 0.81 -0.1
147,583 - 13829 mRNA_5461 0.84 -1.7
147,634 - 13829 mRNA_5461 0.85 -0.4
148,363 + 1.2
148,466 + 0.8
148,498 + 0.1
148,568 - -3.5
148,583 - 13830 mRNA_5462 0.10 0.3
148,631 + 13830 mRNA_5462 0.14 -0.2
148,702 + 13830 mRNA_5462 0.19 -1.7
148,711 - 13830 mRNA_5462 0.19 -0.2
148,783 + 13830 mRNA_5462 0.24 -0.0
148,815 + 13830 mRNA_5462 0.26 1.0
148,939 - 13830 mRNA_5462 0.35 0.5
149,331 - 13830 mRNA_5462 0.63 -1.9
149,447 + 13830 mRNA_5462 0.71 0.7
149,450 - 13830 mRNA_5462 0.71 0.3
149,498 - 13830 mRNA_5462 0.74 0.6
149,572 + 13830 mRNA_5462 0.80 -1.5
149,680 + 13830 mRNA_5462 0.87 1.2
149,932 + 2.3
150,239 - -1.7
150,328 + 0.3
150,393 - 1.7
150,536 + 0.4
150,671 + -1.1