Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5442

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5441: 13809 - Hypothetical Protein, at 102174 to 103025 13809 mRNA_5442: 13810 - HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708, at 103873 to 106982 13810 mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107127 to 108436 13811

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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103,248 + 1.3
103,256 - -0.6
103,291 - 1.3
103,377 + -0.6
103,560 + 0.5
103,664 + 0.8
103,832 - 0.5
104,125 - -0.9
104,137 - -0.8
104,559 - 13810 mRNA_5442 0.22 -2.3
105,718 - 13810 mRNA_5442 0.59 -0.4
106,323 - 13810 mRNA_5442 0.79 -0.9
107,212 + -1.8
107,225 + 0.6
107,227 - -0.1
107,229 + 0.0
107,246 - -0.4
107,268 + 13811 mRNA_5443 0.11 -0.6
107,376 + 13811 mRNA_5443 0.19 0.6
107,526 - 13811 mRNA_5443 0.30 -0.4
107,699 - 13811 mRNA_5443 0.44 0.4
107,721 - 13811 mRNA_5443 0.45 0.0
107,936 - 13811 mRNA_5443 0.62 -0.4
107,953 - 13811 mRNA_5443 0.63 -0.4
107,970 - 13811 mRNA_5443 0.64 1.2