Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5429

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5428: 13796 - KOG0157 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies, at 77473 to 79440 13796 mRNA_5429: 13797 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 79557 to 82396 13797 mRNA_5430: 13798 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 82627 to 84263 13798

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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78,563 - 13796 mRNA_5428 0.55 0.1
78,602 + 13796 mRNA_5428 0.57 1.3
78,907 - 13796 mRNA_5428 0.73 -0.2
79,226 + 13796 mRNA_5428 0.89 0.9
79,295 - -1.4
79,319 - 1.5
79,492 + -0.7
79,780 - 0.6
79,781 + 1.5
79,869 + 13797 mRNA_5429 0.11 -0.1
79,869 + 13797 mRNA_5429 0.11 0.8
79,877 - 13797 mRNA_5429 0.11 0.0
79,889 + 13797 mRNA_5429 0.12 1.6
79,920 + 13797 mRNA_5429 0.13 -0.7
79,975 + 13797 mRNA_5429 0.15 -0.0
80,070 + 13797 mRNA_5429 0.18 -1.2
80,275 - 13797 mRNA_5429 0.25 -0.1
80,502 + 13797 mRNA_5429 0.33 1.4
80,619 + 13797 mRNA_5429 0.37 -0.9
80,671 + 13797 mRNA_5429 0.39 0.2
80,784 - 13797 mRNA_5429 0.43 1.2
80,814 + 13797 mRNA_5429 0.44 -0.8
81,014 + 13797 mRNA_5429 0.51 1.9
81,014 + 13797 mRNA_5429 0.51 -0.3
81,048 + 13797 mRNA_5429 0.53 0.6
81,081 + 13797 mRNA_5429 0.54 1.2
81,277 + 13797 mRNA_5429 0.61 -0.6
81,400 + 13797 mRNA_5429 0.65 0.8
81,845 + 13797 mRNA_5429 0.81 -2.3
82,398 - 0.2
82,409 + 0.0
82,583 - -0.3
82,583 + 0.2
82,883 - 13798 mRNA_5430 0.16 0.7
82,902 - 13798 mRNA_5430 0.17 0.6
82,970 - 13798 mRNA_5430 0.21 -0.3
83,012 - 13798 mRNA_5430 0.24 0.4