Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5421

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788 mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62877 to 64571 13789 mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64822 to 65544 13790

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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62,065 - 13788 mRNA_5420 0.82 0.9
62,073 + 13788 mRNA_5420 0.82 -0.3
62,219 - 13788 mRNA_5420 0.89 0.8
62,219 - 13788 mRNA_5420 0.89 -1.4
62,220 + 13788 mRNA_5420 0.89 1.3
62,377 - -1.1
62,610 - -2.1
62,613 + -0.3
62,710 - 0.9
62,743 - -2.3
62,750 - 0.0
62,752 + -0.0
62,753 - 0.4
62,759 - 1.3
62,765 - 0.5
62,769 + 0.4
62,773 - 1.4
62,774 + 0.7
62,780 + 0.1
62,882 + 0.9
63,037 - 0.3
64,122 - 13789 mRNA_5421 0.73 0.2
64,195 - 13789 mRNA_5421 0.78 0.8
64,476 + 1.2
64,484 + -0.7
64,500 + -1.4
64,503 - -2.9
64,521 + -1.1
64,619 + 1.7
64,621 - 0.1
64,623 - 2.2
64,624 + 0.0
64,655 - 0.1
64,655 - 0.3
64,730 + 1.2
64,772 + -0.0
64,799 + -0.1
64,822 - -1.6
64,895 - 13790 mRNA_5422 0.10 1.8
64,929 - 13790 mRNA_5422 0.15 -0.6
64,930 + 13790 mRNA_5422 0.15 -1.4
64,961 - 13790 mRNA_5422 0.19 -1.2
64,961 - 13790 mRNA_5422 0.19 0.9
65,030 + 13790 mRNA_5422 0.29 -1.0
65,070 - 13790 mRNA_5422 0.34 -0.1
65,076 + 13790 mRNA_5422 0.35 -1.6
65,089 - 13790 mRNA_5422 0.37 -3.0
65,102 + 13790 mRNA_5422 0.39 1.1
65,200 - 13790 mRNA_5422 0.52 -0.3
65,252 + 13790 mRNA_5422 0.59 1.1
65,373 - 13790 mRNA_5422 0.76 -0.1
65,474 - 1.2
65,494 - 1.1
65,498 - -1.5
65,501 + 0.1