Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5414

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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45,176 - 13781 mRNA_5413 0.61 0.3
45,275 + 13781 mRNA_5413 0.65 2.4
45,595 + 13781 mRNA_5413 0.80 -0.1
45,623 - 13781 mRNA_5413 0.81 -0.2
45,669 - 13781 mRNA_5413 0.83 0.6
45,678 - 13781 mRNA_5413 0.84 -0.2
45,678 - 13781 mRNA_5413 0.84 -2.3
45,684 + 13781 mRNA_5413 0.84 0.1
45,706 + 13781 mRNA_5413 0.85 0.8
45,709 + 13781 mRNA_5413 0.85 -0.4
45,715 - 13781 mRNA_5413 0.85 0.2
45,999 + 1.2
46,007 - -1.9
46,120 - -0.1
46,124 - 0.3
46,132 - -2.4
46,154 - -1.9
46,156 - -0.4
46,446 - 13782 mRNA_5414 0.17 0.6
46,447 + 13782 mRNA_5414 0.17 1.8
46,448 - 13782 mRNA_5414 0.17 1.6
46,540 - 13782 mRNA_5414 0.22 -2.5
46,629 + 13782 mRNA_5414 0.27 -0.3
46,671 + 13782 mRNA_5414 0.30 -2.0
46,746 - 13782 mRNA_5414 0.34 1.1
47,024 + 13782 mRNA_5414 0.50 -0.3
47,065 + 13782 mRNA_5414 0.53 0.8
47,072 + 13782 mRNA_5414 0.53 -1.6
47,076 + 13782 mRNA_5414 0.53 2.5
47,078 + 13782 mRNA_5414 0.53 1.1
47,182 - 13782 mRNA_5414 0.60 -3.5
47,323 - 13782 mRNA_5414 0.68 0.2
47,335 - 13782 mRNA_5414 0.68 -0.5
47,340 - 13782 mRNA_5414 0.69 -1.2
47,607 - 13782 mRNA_5414 0.84 0.5
47,618 + 13782 mRNA_5414 0.85 0.1
47,628 + 13782 mRNA_5414 0.86 -1.5
47,635 + 13782 mRNA_5414 0.86 2.7
47,639 - 13782 mRNA_5414 0.86 0.5
47,729 - 1.0
47,759 + 0.0
48,073 + 1.3
48,165 - 1.0
48,654 - 1.4
48,833 - 1.0