Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5408

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5407: 13775 - K15734 SDR16C5 all-trans-retinol dehydrogenase (NAD+), at 28474 to 30165 13775 mRNA_5408: 13776 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 30441 to 31506 13776

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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30,195 + 1.1
30,275 - -1.3
30,280 + -0.5
30,424 - 0.3
30,491 - -0.4
30,491 - 1.8
30,491 - -0.4
30,492 - 0.2
30,492 - 2.1
30,502 - -0.1
30,522 - 1.6
30,589 + 13776 mRNA_5408 0.14 0.1
30,595 - 13776 mRNA_5408 0.14 0.2
30,681 + 13776 mRNA_5408 0.23 0.7
30,812 + 13776 mRNA_5408 0.35 1.6
30,823 + 13776 mRNA_5408 0.36 0.6
30,838 + 13776 mRNA_5408 0.37 0.1
30,944 - 13776 mRNA_5408 0.47 0.4
30,976 + 13776 mRNA_5408 0.50 0.1
31,096 - 13776 mRNA_5408 0.61 -0.4
31,299 + 13776 mRNA_5408 0.80 1.4
31,381 + 13776 mRNA_5408 0.88 0.8
31,476 + 1.2
31,580 + -0.9
31,739 + 0.7
31,749 + 1.1
31,751 - 1.6
31,845 + -0.9
31,873 - -0.7
31,884 + -3.7
31,945 - 1.0
32,038 + 0.7
32,043 + -0.0
32,224 + 1.1
32,334 + 0.7
32,346 - -0.9
32,369 + 0.2
32,369 + 1.2
32,499 - -0.5