Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5401

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768 mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769 mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17110 to 18696 13770

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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14,790 + 13768 mRNA_5400 0.69 0.1
14,898 + 13768 mRNA_5400 0.73 0.7
15,102 - 13768 mRNA_5400 0.82 1.3
15,148 + 13768 mRNA_5400 0.84 -0.0
15,278 + 13768 mRNA_5400 0.89 -0.5
15,309 + 0.1
15,403 + -0.4
15,419 + 0.8
15,456 + 0.7
15,589 + 0.1
15,592 - -0.7
15,594 - 1.2
15,598 + 0.7
15,598 + 1.0
15,604 - 1.8
15,608 + 0.4
15,611 + 1.4
15,613 - 0.2
15,616 + 0.2
15,617 - 0.9
15,622 + -0.7
15,630 + -0.4
15,642 - 0.8
15,647 - 0.8
15,676 - 1.7
15,680 + 0.3
15,714 + 0.4
15,789 + -0.6
15,834 + 2.5
16,094 + 13769 mRNA_5401 0.33 -0.2
16,273 + 13769 mRNA_5401 0.52 0.9
16,357 + 13769 mRNA_5401 0.61 -0.5
16,669 + 0.5
16,804 + -0.2
16,807 + -1.6
16,813 + -2.5
16,826 - -1.5
16,842 - 1.0
16,989 + 0.5
16,992 + 0.7
17,002 + 0.5
17,119 - 1.4
17,262 + 0.3
17,281 + 13770 mRNA_5402 0.11 -0.4
17,325 + 13770 mRNA_5402 0.14 0.7
17,516 + 13770 mRNA_5402 0.26 -0.3
17,557 + 13770 mRNA_5402 0.28 0.3
17,728 - 13770 mRNA_5402 0.39 -0.7
17,728 - 13770 mRNA_5402 0.39 0.8