Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5364

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544330 to 546394 13731 mRNA_5364: 13732 - KOG1630 Growth hormone-induced protein and related proteins, at 546685 to 547952 13732 mRNA_5365: 13733 - K00107 ALO D-arabinono-1,4-lactone oxidase, at 548401 to 550040 13733

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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546,375 + 0.7
546,402 + 1.2
546,652 - -2.7
546,710 + 0.1
546,860 + 13732 mRNA_5364 0.14 -0.3
546,914 + 13732 mRNA_5364 0.18 -0.3
547,123 + 13732 mRNA_5364 0.35 1.4
547,238 - 13732 mRNA_5364 0.44 -1.0
547,267 + 13732 mRNA_5364 0.46 -0.4
547,267 + 13732 mRNA_5364 0.46 -0.6
547,270 - 13732 mRNA_5364 0.46 0.9
547,405 - 13732 mRNA_5364 0.57 0.1
547,421 + 13732 mRNA_5364 0.58 -0.0
547,428 + 13732 mRNA_5364 0.59 -0.6
547,666 - 13732 mRNA_5364 0.77 -0.0
547,694 - 13732 mRNA_5364 0.80 -0.5
547,706 + 13732 mRNA_5364 0.81 -1.2
547,746 + 13732 mRNA_5364 0.84 0.8
547,837 - 1.7
547,849 - -0.4
547,866 + 1.7
547,878 - -1.6
547,884 + 0.3
548,018 - -1.9
548,025 - 0.2
548,026 - 0.3
548,036 - -0.6
548,037 - -0.3
548,092 - -1.0
548,477 - 1.4
548,489 + -2.2
548,499 + -0.4
548,772 + 13733 mRNA_5365 0.23 -0.0
548,772 - 13733 mRNA_5365 0.23 -0.2
548,790 - 13733 mRNA_5365 0.24 -0.5