Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5338

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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487,523 - 13705 mRNA_5337 0.85 0.4
488,100 - 2.1
488,146 + 1.5
488,373 - -1.0
488,393 + -1.2
488,408 + -2.1
488,410 - 0.0
488,520 - -0.2
488,545 - 0.6
488,803 + 13706 mRNA_5338 0.11 0.3
488,810 - 13706 mRNA_5338 0.11 -0.7
488,810 - 13706 mRNA_5338 0.11 -1.9
488,822 - 13706 mRNA_5338 0.12 -1.3
488,956 - 13706 mRNA_5338 0.16 -1.0
488,991 - 13706 mRNA_5338 0.17 -2.8
488,996 + 13706 mRNA_5338 0.17 -0.9
489,100 + 13706 mRNA_5338 0.21 -2.3
489,545 - 13706 mRNA_5338 0.36 -1.6
489,925 - 13706 mRNA_5338 0.49 -0.8
489,968 - 13706 mRNA_5338 0.50 -1.9
490,131 + 13706 mRNA_5338 0.56 -2.2
490,241 + 13706 mRNA_5338 0.60 -1.7
490,297 + 13706 mRNA_5338 0.62 -1.8
490,508 + 13706 mRNA_5338 0.69 -1.0
490,508 - 13706 mRNA_5338 0.69 -2.8
490,524 + 13706 mRNA_5338 0.69 -0.7
490,564 - 13706 mRNA_5338 0.71 -1.8
490,576 - 13706 mRNA_5338 0.71 -1.5
490,740 - 13706 mRNA_5338 0.77 -2.3
490,925 + 13706 mRNA_5338 0.83 -1.9