Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5331

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471272 to 473464 13698 mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473951 to 475290 13699 mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475424 to 477955 13700

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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473,156 - 13698 mRNA_5330 0.86 0.3
473,251 - -1.5
473,302 + 1.0
473,303 - 0.1
473,576 - -1.1
473,576 - -0.4
473,576 + -0.3
473,578 - -2.6
473,580 - 0.3
473,582 - 2.3
473,585 + 1.9
473,589 - -0.6
473,601 - 0.7
473,729 + 1.4
473,859 + 0.2
473,873 + -0.0
473,887 - 1.6
474,023 - 0.7
474,303 - 13699 mRNA_5331 0.26 0.2
474,313 + 13699 mRNA_5331 0.27 -1.1
474,316 + 13699 mRNA_5331 0.27 -0.0
474,319 + 13699 mRNA_5331 0.27 1.3
474,407 - 13699 mRNA_5331 0.34 1.0
474,460 + 13699 mRNA_5331 0.38 -2.4
474,565 - 13699 mRNA_5331 0.46 -0.2
474,752 - 13699 mRNA_5331 0.60 -1.0
474,773 + 13699 mRNA_5331 0.61 -1.2
475,027 - 13699 mRNA_5331 0.80 0.5
475,044 + 13699 mRNA_5331 0.82 1.2
475,166 + -0.9
475,288 - 0.4
475,360 - -0.7
475,363 - 0.1
475,383 + -0.1
475,392 + 0.5
475,399 - 1.3
475,404 + -1.0
475,530 + -0.5
475,546 + -0.4
475,679 - 13700 mRNA_5332 0.10 -0.3
476,090 - 13700 mRNA_5332 0.26 0.1
476,133 + 13700 mRNA_5332 0.28 -0.4
476,134 - 13700 mRNA_5332 0.28 -2.2