Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5328

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5327: 13695 - Hypothetical Protein, at 463511 to 464845 13695 mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465608 to 466886 13696 mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467035 to 469864 13697

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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464,642 - 13695 mRNA_5327 0.85 0.3
464,673 - 13695 mRNA_5327 0.87 1.2
464,954 - 0.2
464,956 + -1.9
464,969 + 0.1
464,977 - -1.5
465,122 + -1.2
465,125 + 0.1
465,129 - -0.3
465,132 + -1.8
465,252 + -0.7
465,267 + 1.4
465,281 - 0.3
465,292 - 0.1
465,300 - 0.2
465,408 - 0.6
465,417 + -1.3
465,418 + -0.3
465,451 - 2.1
465,584 + -0.3
465,590 + 0.4
465,607 + 0.5
465,619 + 1.4
466,016 - 13696 mRNA_5328 0.32 -1.0
466,467 - 13696 mRNA_5328 0.67 0.6
466,598 - 13696 mRNA_5328 0.77 -0.8
466,643 + 13696 mRNA_5328 0.81 -1.7
467,033 - 1.4
467,042 - -0.4
467,138 - 0.5
467,207 - -1.0
467,208 + 0.2
467,251 + 1.6
467,284 - -0.2
467,285 + -0.7
467,318 - 13697 mRNA_5329 0.10 0.4