Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5314

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5313: 13681 - KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15, at 430404 to 433324 13681 mRNA_5314: 13682 - Hypothetical Protein, at 433901 to 435484 13682 mRNA_5315: 13683 - K06158 ABCF3 ATP-binding cassette, subfamily F, member 3, at 436318 to 439528 13683

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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433,261 + 0.3
433,266 + -0.7
433,367 + -1.5
433,507 + -0.2
433,538 + 0.2
433,664 - -1.5
433,732 + 1.3
433,799 - 1.0
433,815 - -0.4
433,988 + 1.2
434,102 - 13682 mRNA_5314 0.13 0.1
434,108 - 13682 mRNA_5314 0.13 0.3
434,127 + 13682 mRNA_5314 0.14 -2.0
434,129 - 13682 mRNA_5314 0.14 -2.4
434,154 + 13682 mRNA_5314 0.16 2.8
434,232 + 13682 mRNA_5314 0.21 -1.3
434,238 + 13682 mRNA_5314 0.21 -0.2
434,245 + 13682 mRNA_5314 0.22 -0.6
434,266 - 13682 mRNA_5314 0.23 -0.1
434,368 + 13682 mRNA_5314 0.29 1.2
434,501 + 13682 mRNA_5314 0.38 -0.2
434,724 + 13682 mRNA_5314 0.52 0.1
434,805 + 13682 mRNA_5314 0.57 -0.8
434,825 + 13682 mRNA_5314 0.58 0.4
434,841 - 13682 mRNA_5314 0.59 -0.4
434,856 - 13682 mRNA_5314 0.60 0.2
435,279 + 13682 mRNA_5314 0.87 1.0
435,296 - 13682 mRNA_5314 0.88 -0.7
435,449 - -0.3
435,453 + 0.0
435,456 - 2.2
435,469 + 2.7
435,755 - 0.4
435,848 - -0.2
435,903 - 0.8
436,185 - -0.5