Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5303

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5303: 13671 - K17608 STRN1_3_4 striatin 1/3/4, at 405190 to 408801 13671 mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409088 to 413869 13672

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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404,267 + -1.0
404,280 - -1.2
404,286 + 0.2
404,397 - -0.2
404,401 - -1.6
404,403 - 0.2
404,420 - -0.2
404,420 + 0.6
404,505 - -1.8
404,505 - 0.4
404,525 - -1.6
404,538 + 1.6
404,539 - -0.5
404,654 - -0.8
404,654 - -0.1
404,655 - 0.5
404,666 + 3.5
404,675 + 0.1
404,814 - -2.8
404,842 - 1.5
404,868 - 1.3
404,946 - 0.6
404,986 + 1.3
405,003 + 0.3
405,114 + 1.8
406,006 + 13671 mRNA_5303 0.23 1.1
406,233 - 13671 mRNA_5303 0.29 0.4
406,424 - 13671 mRNA_5303 0.34 2.5
406,574 - 13671 mRNA_5303 0.38 1.5
406,888 - 13671 mRNA_5303 0.47 -1.6
406,912 - 13671 mRNA_5303 0.48 1.2
406,936 + 13671 mRNA_5303 0.48 1.0
406,986 - 13671 mRNA_5303 0.50 1.6
406,995 - 13671 mRNA_5303 0.50 -0.6
407,008 - 13671 mRNA_5303 0.50 0.0
407,018 - 13671 mRNA_5303 0.51 1.7
407,584 - 13671 mRNA_5303 0.66 -0.4
407,989 + 13671 mRNA_5303 0.77 0.6
408,060 - 13671 mRNA_5303 0.79 0.5
408,182 - 13671 mRNA_5303 0.83 1.3
408,485 + 0.1
408,522 + -0.1
408,525 + -0.5
408,596 + 0.1
408,806 + -0.2
408,881 - -0.7
409,158 - 0.3
409,176 + -0.3
409,330 - 0.9
409,336 + -1.6
409,363 - -1.6
409,682 + 13672 mRNA_5304 0.12 -0.1