Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5293

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5292: 13660 - Hypothetical Protein, at 372061 to 373005 13660 mRNA_5293: 13661 - Hypothetical Protein, at 373499 to 378247 13661 mRNA_5294: 13662 - K02830 HRAD1, RAD17 cell cycle checkpoint protein, at 378624 to 380568 13662

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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372,585 - 13660 mRNA_5292 0.55 1.3
372,589 + 13660 mRNA_5292 0.56 0.7
372,692 + 13660 mRNA_5292 0.67 1.2
372,701 - 13660 mRNA_5292 0.68 0.1
372,717 - 13660 mRNA_5292 0.69 -1.0
372,721 + 13660 mRNA_5292 0.70 0.1
372,730 - 13660 mRNA_5292 0.71 -1.6
372,730 + 13660 mRNA_5292 0.71 -0.1
372,745 - 13660 mRNA_5292 0.72 3.7
372,840 + 13660 mRNA_5292 0.82 -0.7
372,843 - 13660 mRNA_5292 0.83 -0.9
372,850 + 13660 mRNA_5292 0.83 -1.8
372,860 + 13660 mRNA_5292 0.85 1.8
372,876 + 13660 mRNA_5292 0.86 0.6
372,933 + 0.1
372,988 - 0.4
373,016 - 1.1
373,018 - -0.5
373,023 + 0.2
373,031 + 0.7
373,037 - 0.2
373,040 + 0.2
373,053 + 0.0
373,076 + 0.5
373,108 + -1.6
373,164 - -1.2
373,170 + -0.4
373,191 - 2.0
373,192 + -0.4
373,202 + -1.0
373,213 + 0.2
373,213 + 1.7
373,220 - 0.7
373,222 + -0.7
373,347 + 1.2
373,350 + 0.9
373,368 + -1.3
373,623 - -0.1
373,743 + -1.5
373,827 + 0.0
374,059 - 13661 mRNA_5293 0.12 -0.2
374,122 - 13661 mRNA_5293 0.13 -1.4
374,345 + 13661 mRNA_5293 0.18 -0.7
374,545 - 13661 mRNA_5293 0.22 -1.1
374,802 - 13661 mRNA_5293 0.27 -0.4
375,344 - 13661 mRNA_5293 0.39 0.4
375,544 + 13661 mRNA_5293 0.43 -0.5
375,546 - 13661 mRNA_5293 0.43 0.8
375,575 - 13661 mRNA_5293 0.44 0.1
375,599 - 13661 mRNA_5293 0.44 0.5
375,705 + 13661 mRNA_5293 0.46 0.0
375,737 + 13661 mRNA_5293 0.47 -0.4
376,029 + 13661 mRNA_5293 0.53 1.3
376,642 + 13661 mRNA_5293 0.66 2.5
376,837 - 13661 mRNA_5293 0.70 -1.3
376,882 + 13661 mRNA_5293 0.71 -0.1
376,884 + 13661 mRNA_5293 0.71 -0.3
376,892 - 13661 mRNA_5293 0.71 0.3
376,975 + 13661 mRNA_5293 0.73 -1.1
377,627 - 13661 mRNA_5293 0.87 0.7
377,705 + 13661 mRNA_5293 0.89 0.2
378,003 - -1.0
378,022 - -0.1
378,061 + -1.4
378,130 + -0.1
378,151 + 1.0
378,307 - -0.3
378,334 + 0.4
378,459 + 0.2
378,509 - 1.3
378,704 - 0.4
378,738 - -2.6
379,036 - 13662 mRNA_5294 0.21 -0.1
379,054 - 13662 mRNA_5294 0.22 0.4
379,059 + 13662 mRNA_5294 0.22 -1.5
379,162 + 13662 mRNA_5294 0.28 -1.1
379,179 + 13662 mRNA_5294 0.29 -2.0