Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5259

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297725 to 299742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300162 to 301995 13627 mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302752 to 303807 13628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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299,330 + 13626 mRNA_5258 0.80 1.2
299,438 - 13626 mRNA_5258 0.85 -0.6
299,594 + -0.1
299,895 - -0.5
299,921 + 1.4
300,209 + 0.3
300,220 + 0.4
300,237 + -1.6
300,655 - 13627 mRNA_5259 0.27 -0.9
300,776 - 13627 mRNA_5259 0.33 -1.0
300,803 - 13627 mRNA_5259 0.35 0.4
301,046 + 13627 mRNA_5259 0.48 0.0
301,179 - 13627 mRNA_5259 0.55 0.1
302,085 - -0.1
302,105 + -0.8
302,126 + -2.0
302,231 - 0.1
302,371 + 0.8
302,378 - -0.6
302,378 + -0.4
302,387 - 0.7
302,389 - -0.2
302,391 + -0.3
302,395 - 1.5
302,399 - -0.7
302,404 - 0.3
302,512 - 0.2
302,549 + 1.0
302,677 + -0.8
302,677 + -0.4
302,680 - 0.6
302,687 - -1.2
302,691 - 0.5
302,694 + -1.9
302,706 + -2.3