Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5254

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5253: 13621 - Hypothetical Protein, at 278991 to 279822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280539 to 283748 13622 mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284038 to 290339 13623

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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279,552 - 13621 mRNA_5253 0.67 -0.1
279,561 - 13621 mRNA_5253 0.69 -0.2
279,710 - 13621 mRNA_5253 0.86 -2.2
279,710 - 13621 mRNA_5253 0.86 -0.1
279,719 + 13621 mRNA_5253 0.88 1.1
279,839 - 1.1
279,864 + 2.1
279,872 - 0.6
279,886 + -1.0
279,892 + 0.3
279,893 - -0.4
279,971 + -2.1
280,091 + 1.0
280,107 + 0.1
280,131 + 1.4
280,157 + 0.6
280,324 - 0.4
280,492 + 1.6
280,706 + 2.7
281,199 + 13622 mRNA_5254 0.21 0.9
281,500 + 13622 mRNA_5254 0.30 1.9
281,646 - 13622 mRNA_5254 0.34 0.1
281,656 + 13622 mRNA_5254 0.35 -0.2
283,403 + 13622 mRNA_5254 0.89 1.7
283,680 + 0.4
283,815 - -0.3
283,825 - 0.3
283,826 - -1.2
283,829 + 0.5
283,850 - -0.6
283,855 + -0.2
283,856 - 0.4
283,856 - 0.6
283,857 - -0.3
283,967 - 0.8
283,977 + 0.8
284,133 + 1.4