Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5248

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256939 to 258074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258879 to 260199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260649 to 264628 13617

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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257,889 + 13615 mRNA_5247 0.84 0.1
258,058 - 1.2
258,756 + -1.3
258,790 + -0.2
259,047 - 13616 mRNA_5248 0.13 1.4
259,049 - 13616 mRNA_5248 0.13 -0.5
259,222 - 13616 mRNA_5248 0.26 1.1
259,334 - 13616 mRNA_5248 0.34 -2.2
259,362 - 13616 mRNA_5248 0.37 -0.3
259,413 + 13616 mRNA_5248 0.40 -1.5
259,722 + 13616 mRNA_5248 0.64 -0.1
259,896 - 13616 mRNA_5248 0.77 1.0
259,934 - 13616 mRNA_5248 0.80 0.7
259,945 - 13616 mRNA_5248 0.81 0.7
259,983 + 13616 mRNA_5248 0.84 -0.1
260,019 - 13616 mRNA_5248 0.86 0.6
260,080 + 0.2
260,084 + 0.8
260,088 + 0.1
260,239 - -0.3
260,348 - -0.4
260,364 - -2.1
260,390 + 1.6
260,516 + -1.7
260,553 + -3.3