Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5219

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174597 to 177713 13586 mRNA_5219: 13587 - Hypothetical Protein, at 177901 to 180149 13587 mRNA_5220: 13588 - K09241 GAL4 transcriptional regulatory protein GAL4, at 180404 to 182796 13588

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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177,168 - 13586 mRNA_5218 0.82 1.0
177,366 + 13586 mRNA_5218 0.89 -2.6
177,462 + -0.8
177,502 + 0.7
177,521 + 0.3
177,563 - -0.3
177,578 + -0.9
177,603 + 0.2
177,609 - -0.2
177,615 - -1.0
177,728 + -0.4
177,737 - 0.3
177,747 + -1.5
177,750 - -0.2
177,760 + 2.8
177,766 - -1.3
177,775 - 0.0
177,785 - -0.2
177,818 - -2.0
177,840 + 0.3
177,860 + 0.4
177,864 - 0.1
177,978 - -0.0
177,986 + 0.6
178,001 + -0.0
178,071 - 2.8
178,112 - 1.1
178,124 - 0.4
178,132 + 13587 mRNA_5219 0.10 -0.0
178,244 - 13587 mRNA_5219 0.15 -1.2
178,307 - 13587 mRNA_5219 0.18 0.0
178,408 + 13587 mRNA_5219 0.23 0.5
178,422 + 13587 mRNA_5219 0.23 -0.3
178,439 - 13587 mRNA_5219 0.24 0.9
178,567 - 13587 mRNA_5219 0.30 0.8
179,115 - 13587 mRNA_5219 0.54 -0.1
179,137 - 13587 mRNA_5219 0.55 -0.1
179,333 - 13587 mRNA_5219 0.64 1.0
179,384 - 13587 mRNA_5219 0.66 -2.5
179,424 + 13587 mRNA_5219 0.68 -1.3
179,450 + 13587 mRNA_5219 0.69 0.7
179,472 + 13587 mRNA_5219 0.70 0.7
179,564 - 13587 mRNA_5219 0.74 0.6
179,580 - 13587 mRNA_5219 0.75 0.6
179,614 + 13587 mRNA_5219 0.76 0.0
179,792 - 13587 mRNA_5219 0.84 0.1
179,877 + 13587 mRNA_5219 0.88 -0.4
179,921 + 13587 mRNA_5219 0.90 0.9
180,210 + 1.0
180,465 - 0.1
180,490 - -0.2
180,501 - -0.9
180,522 + -2.3
180,808 - 13588 mRNA_5220 0.17 1.2
180,811 + 13588 mRNA_5220 0.17 0.8