Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5200

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5199: 13567 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 133607 to 137030 13567 mRNA_5200: 13568 - Hypothetical Protein, at 137334 to 138235 13568 mRNA_5201: 13569 - K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase, at 139005 to 139988 13569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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136,361 - 13567 mRNA_5199 0.80 0.6
136,545 + 13567 mRNA_5199 0.86 0.7
136,567 + 13567 mRNA_5199 0.86 0.2
136,851 + 0.1
136,898 + 0.2
137,007 - 1.2
137,161 + 0.3
137,172 - -0.6
137,305 + 0.1
137,438 + 13568 mRNA_5200 0.12 0.3
137,449 + 13568 mRNA_5200 0.13 -0.4
137,454 - 13568 mRNA_5200 0.13 0.9
137,458 - 13568 mRNA_5200 0.14 -1.8
137,480 - 13568 mRNA_5200 0.16 -1.6
137,482 + 13568 mRNA_5200 0.16 1.1
137,519 + 13568 mRNA_5200 0.21 -0.4
137,589 + 13568 mRNA_5200 0.28 -0.6
137,594 + 13568 mRNA_5200 0.29 -1.6
137,610 + 13568 mRNA_5200 0.31 -0.2
137,687 + 13568 mRNA_5200 0.39 0.6
137,909 + 13568 mRNA_5200 0.64 -0.9
138,022 - 13568 mRNA_5200 0.76 1.2
138,178 + -1.0
138,389 - 0.2
138,755 - -2.4
139,075 - -1.4
139,208 - 13569 mRNA_5201 0.21 -1.9