Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5176

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5175: 13543 - K08341 GABARAP, ATG8, LC3 GABA(A) receptor-associated protein, at 78484 to 79264 13543 mRNA_5176: 13544 - Hypothetical Protein, at 80167 to 80892 13544 mRNA_5177: 13545 - K07874 RAB1A Ras-related protein Rab-1A, at 81218 to 82188 13545

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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79,200 - 0.6
79,314 - 0.7
79,426 - 0.9
79,587 - -0.1
79,703 + 1.0
79,758 + -1.8
79,882 - 0.9
79,999 + -0.7
80,229 + -1.3
80,335 + 13544 mRNA_5176 0.23 -1.5
80,342 + 13544 mRNA_5176 0.24 -0.9
80,442 + 13544 mRNA_5176 0.38 -0.0
80,444 - 13544 mRNA_5176 0.38 -0.9
80,501 + 13544 mRNA_5176 0.46 0.7
80,502 - 13544 mRNA_5176 0.46 -0.5
80,643 - 13544 mRNA_5176 0.66 1.4
80,786 - 13544 mRNA_5176 0.85 1.4
80,799 + 13544 mRNA_5176 0.87 -1.2
80,814 + 13544 mRNA_5176 0.89 -0.8
81,145 + -0.4
81,164 + 0.7
81,168 + -1.2