Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5154

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26390 to 28027 13521 mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522 mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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28,099 + -1.1
28,145 - -1.4
28,145 - -0.2
28,215 - -0.6
28,234 + 0.6
28,261 + -0.1
28,285 - -0.3
28,343 - -1.1
28,366 + 1.9
28,372 - -2.2
28,395 - -1.3
28,414 - 0.2
28,414 + -1.5
28,416 + 1.1
28,427 + 1.3
28,551 + -1.4
28,693 - -1.0
28,730 + 2.1
28,850 - 0.1
28,856 + 2.1
29,009 + 13522 mRNA_5154 0.16 1.2
29,137 + 13522 mRNA_5154 0.24 1.3
29,189 + 13522 mRNA_5154 0.28 -2.1
29,297 + 13522 mRNA_5154 0.35 0.4
29,299 + 13522 mRNA_5154 0.35 0.4
29,481 - 13522 mRNA_5154 0.48 0.6
29,726 + 13522 mRNA_5154 0.64 1.3
29,881 + 13522 mRNA_5154 0.75 1.0
30,028 + 13522 mRNA_5154 0.85 0.3
30,177 + -0.6
30,313 + 0.6
30,512 - 0.2
30,520 - 2.7
30,605 + 1.3
30,735 - 2.8
30,747 + 1.3
30,761 - 1.5
30,794 - 3.6
31,173 - 13523 mRNA_5155 0.32 1.0
31,199 - 13523 mRNA_5155 0.34 1.9