Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5134

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5133: 13501 - Interpro Proteasome assembly chaperone 4, at 1836292 to 1836837 13501 mRNA_5134: 13502 - Hypothetical Protein, at 1837309 to 1837612 13502 mRNA_5135: 13503 - KOG2112 Lysophospholipase, at 1838098 to 1839566 13503

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,836,411 - 13501 mRNA_5133 0.22 1.6
1,836,411 - 13501 mRNA_5133 0.22 0.6
1,836,537 + 13501 mRNA_5133 0.45 0.1
1,836,552 - 13501 mRNA_5133 0.48 -0.1
1,836,654 - 13501 mRNA_5133 0.66 1.5
1,836,657 - 13501 mRNA_5133 0.67 0.7
1,836,860 + 1.4
1,837,125 + -0.7
1,837,235 + -0.9
1,837,326 + 1.6
1,837,431 - 13502 mRNA_5134 0.40 0.3
1,837,453 + 13502 mRNA_5134 0.47 -0.5
1,837,463 - 13502 mRNA_5134 0.51 -0.0
1,837,572 - 13502 mRNA_5134 0.87 0.8
1,837,639 - -0.5
1,837,728 - 0.5
1,837,748 - -1.4
1,837,774 + 0.4
1,837,780 - 0.5
1,837,794 + -0.1
1,837,794 + -0.5
1,837,817 - 0.1
1,837,818 - 0.2
1,837,823 + -0.5
1,837,823 - 0.2
1,837,824 - -0.5
1,837,824 + -0.5
1,837,824 - 1.5
1,837,825 - -0.4
1,837,826 - 0.3
1,837,830 + 0.9
1,837,836 - -0.1
1,837,837 - 1.1
1,837,841 - -0.1
1,837,842 + 0.3
1,837,843 - -0.3
1,837,844 - -1.6
1,837,849 + 0.7
1,837,855 + 0.1
1,837,869 + 0.0
1,837,870 - -0.9
1,837,873 + -0.0
1,837,876 + -1.0
1,837,877 + 0.6
1,837,879 - -0.5
1,837,879 - -0.0
1,837,880 + 0.2
1,837,898 - -0.3
1,837,909 + 0.2
1,837,914 + -0.1
1,837,955 - -1.1
1,837,955 - 1.1
1,837,956 + -0.1
1,837,956 + 0.0
1,837,968 + -3.2
1,837,970 - 0.1
1,837,971 + 0.6
1,837,972 - -0.0
1,837,975 + 0.5
1,837,979 - 0.8
1,837,980 - 0.8
1,837,980 - -0.0
1,837,981 + -0.1
1,837,982 - 0.2
1,837,982 + -1.5
1,837,983 + -1.0
1,837,983 + 0.5
1,837,983 - 0.5
1,837,984 - 0.6
1,837,984 + -0.4
1,837,987 + 1.7
1,837,987 + 1.4
1,837,987 + 0.9
1,837,987 - 0.3
1,837,987 - -1.0
1,837,988 - 0.2
1,837,990 + 0.2
1,837,993 + 1.9
1,837,994 - 1.3
1,837,994 + -1.0
1,837,996 + 1.4
1,837,996 + 1.4
1,837,999 - 1.8
1,838,000 - -0.2
1,838,006 + -0.1
1,838,007 - -0.7
1,838,007 + -1.0
1,838,009 + 1.2
1,838,011 - -0.6
1,838,012 + -0.3
1,838,014 - 0.2
1,838,023 + -1.2
1,838,023 - -3.8
1,838,024 + -0.8
1,838,026 - 1.5
1,838,030 + -0.9
1,838,036 - -0.9
1,838,042 + 0.6
1,838,043 + -0.3
1,838,194 + 0.4
1,838,206 - -0.9
1,838,299 - 13503 mRNA_5135 0.14 0.0
1,838,308 - 13503 mRNA_5135 0.14 -0.9
1,838,467 + 13503 mRNA_5135 0.25 0.0
1,838,505 + 13503 mRNA_5135 0.28 0.3