Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5111

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1783616 to 1785108 13478 mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1785372 to 1788381 13479 mRNA_5112: 13480 - KOG0872 Sterol C5 desaturase, at 1789147 to 1790624 13480

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,784,477 - 13478 mRNA_5110 0.58 -0.2
1,784,754 + 13478 mRNA_5110 0.76 -0.4
1,784,901 - 13478 mRNA_5110 0.86 0.1
1,785,008 - 0.4
1,785,877 + 13479 mRNA_5111 0.17 1.0
1,785,900 - 13479 mRNA_5111 0.18 -0.1
1,785,919 + 13479 mRNA_5111 0.18 -1.0
1,786,059 - 13479 mRNA_5111 0.23 0.0
1,786,077 + 13479 mRNA_5111 0.23 -1.1
1,786,204 + 13479 mRNA_5111 0.28 0.5
1,786,375 + 13479 mRNA_5111 0.33 3.1
1,786,758 + 13479 mRNA_5111 0.46 -0.1
1,787,346 + 13479 mRNA_5111 0.66 -2.3
1,787,532 - 13479 mRNA_5111 0.72 -0.8
1,787,535 - 13479 mRNA_5111 0.72 0.9
1,787,568 - 13479 mRNA_5111 0.73 -0.3
1,787,966 + 13479 mRNA_5111 0.86 -1.0
1,788,098 - -0.6
1,788,102 + -0.5
1,788,260 - 1.5
1,788,277 + 0.8
1,788,281 + -0.2
1,788,368 - -1.2
1,788,387 - -3.0
1,788,407 + -0.2
1,788,423 + 1.1
1,788,551 - 0.3
1,788,562 + 0.4
1,788,562 + -0.5
1,788,563 - 1.0
1,788,564 + 0.2
1,788,567 + 0.6
1,788,568 + -1.1
1,788,584 - 0.8
1,788,585 - -0.3
1,788,586 + 0.8
1,788,597 - -0.3
1,789,029 + -0.4
1,789,036 + 0.3
1,789,167 + -1.4
1,789,174 - -0.4
1,789,196 + 1.1
1,789,228 - 0.4