Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5106

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5105: 13473 - HMMPfam-Frequency clock protein-PF09421, at 1765221 to 1768687 13473 mRNA_5106: 13474 - K12819 SLU7 pre-mRNA-processing factor SLU7, at 1769315 to 1772134 13474 mRNA_5107: 13475 - K03130 TAF5 transcription initiation factor TFIID subunit 5, at 1772311 to 1779712 13475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,768,422 - -0.8
1,768,433 - -0.8
1,768,433 + 0.3
1,768,445 - -0.6
1,768,448 + 0.5
1,768,450 + -1.1
1,768,551 + -1.3
1,768,570 - 0.1
1,768,576 - 0.6
1,768,585 - 0.3
1,768,590 + 1.5
1,768,599 + -0.3
1,768,616 - -0.2
1,768,626 + 0.9
1,768,632 + -1.4
1,768,676 - -1.0
1,768,678 - 1.5
1,768,742 - -0.5
1,768,745 + 0.8
1,768,753 - -1.2
1,768,755 - 0.6
1,768,763 + -3.5
1,768,769 + -1.1
1,768,775 - 0.4
1,768,780 - -2.4
1,768,792 + 0.4
1,768,793 + 0.3
1,768,797 - -3.0
1,768,798 - 0.9
1,768,800 + -0.3
1,768,802 - 0.2
1,768,806 + 0.6
1,768,813 - 2.0
1,768,813 - -0.1
1,768,817 - 1.2
1,768,883 - 0.5
1,768,894 - 0.7
1,768,915 - -0.1
1,768,915 - 0.0
1,768,928 - 0.2
1,768,931 + -0.0
1,768,935 - -0.1
1,768,935 + -2.3
1,768,937 + 0.0
1,768,944 + 0.6
1,768,945 - -0.9
1,768,947 - 0.2
1,768,952 - -0.0
1,768,963 - 0.8
1,768,964 + -0.1
1,768,984 - -1.4
1,769,008 + 0.6
1,769,009 - -1.1
1,769,014 - -1.1
1,769,015 - 0.5
1,769,020 + -0.8
1,769,021 + -0.8
1,769,039 + -1.0
1,769,045 + -1.5
1,769,046 - -0.2
1,769,050 + 1.6
1,769,052 + 1.4
1,769,054 + 0.3
1,769,063 + 0.3
1,769,065 - -1.5
1,769,070 - 0.3
1,769,100 + -1.0
1,769,147 + -1.9
1,769,150 - -2.6
1,769,164 - 0.3
1,769,170 + -0.8
1,769,196 - 0.8
1,769,197 + 0.7
1,769,198 + -0.5
1,769,201 - 0.9
1,769,205 - 0.1
1,769,212 + -1.2
1,769,218 + -0.0
1,769,225 - 1.8
1,769,257 + 0.7
1,769,262 - 1.0
1,769,265 - -1.9
1,769,272 - -1.0
1,769,275 + 1.0
1,769,275 - -0.2
1,769,275 + 1.5
1,769,276 + -0.7
1,769,276 + -0.6
1,769,283 + 0.2
1,769,295 - -1.2
1,769,301 + 1.1
1,769,301 + 0.1
1,769,301 + 0.2
1,769,326 - 0.0
1,769,333 - -1.1
1,769,338 - -0.2
1,769,338 + 2.4
1,769,339 - -0.3
1,769,345 - -0.2
1,769,355 - 2.6
1,769,356 - 0.6
1,769,362 - -0.4
1,769,365 - -0.3
1,769,366 + 1.3
1,769,406 - 1.0
1,769,452 - -0.1
1,769,470 - -0.2
1,769,488 - -1.6
1,769,488 - -0.2
1,769,490 - -0.1
1,769,500 - -0.0
1,769,509 - 1.2
1,769,529 - -1.5
1,769,548 - -0.0
1,769,551 - -0.3
1,769,558 + -1.1
1,769,572 - 1.7
1,769,575 - -1.3
1,769,576 - -0.6
1,769,580 - -1.2
1,769,591 + -1.7
1,769,591 + -0.2
1,769,619 - 13474 mRNA_5106 0.11 1.0
1,769,624 - 13474 mRNA_5106 0.11 1.5
1,769,626 - 13474 mRNA_5106 0.11 0.2
1,769,653 + 13474 mRNA_5106 0.12 1.2
1,769,659 + 13474 mRNA_5106 0.12 0.5
1,769,660 - 13474 mRNA_5106 0.12 -0.1
1,769,661 + 13474 mRNA_5106 0.12 -0.7
1,769,667 - 13474 mRNA_5106 0.12 0.3
1,769,675 + 13474 mRNA_5106 0.13 -0.7
1,769,679 - 13474 mRNA_5106 0.13 -1.8
1,769,687 + 13474 mRNA_5106 0.13 -0.8
1,769,701 + 13474 mRNA_5106 0.14 -1.0
1,769,828 - 13474 mRNA_5106 0.18 -0.2
1,769,860 + 13474 mRNA_5106 0.19 -2.8
1,769,861 + 13474 mRNA_5106 0.19 -1.1
1,769,861 - 13474 mRNA_5106 0.19 -0.5
1,769,999 - 13474 mRNA_5106 0.24 -0.0
1,770,127 - 13474 mRNA_5106 0.29 0.3
1,772,190 + -1.9