Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5062

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5061: 13429 - K11414 SIRT4, SIR2L4 NAD-dependent deacetylase sirtuin 4, at 1661158 to 1662498 13429 mRNA_5062: 13430 - HMMPfam-Zinc-binding-PF12907,SUPERFAMILY--SSF118359, at 1662567 to 1663555 13430 mRNA_5063: 13431 - K10301 FBXO21 F-box protein 21, at 1663864 to 1665707 13431

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,661,611 - 13429 mRNA_5061 0.34 -0.9
1,661,634 + 13429 mRNA_5061 0.35 0.8
1,661,817 - 13429 mRNA_5061 0.49 0.3
1,661,937 - 13429 mRNA_5061 0.58 -0.8
1,662,074 + 13429 mRNA_5061 0.68 -0.9
1,662,474 - 0.5
1,662,482 - 0.4
1,662,493 + 0.0
1,662,643 + -0.1
1,662,740 - 13430 mRNA_5062 0.17 2.6
1,662,764 - 13430 mRNA_5062 0.20 -0.1
1,662,769 - 13430 mRNA_5062 0.20 -0.4
1,662,770 - 13430 mRNA_5062 0.21 -0.0
1,662,784 + 13430 mRNA_5062 0.22 -0.4
1,662,797 - 13430 mRNA_5062 0.23 1.0
1,662,955 + 13430 mRNA_5062 0.39 -0.2
1,663,085 + 13430 mRNA_5062 0.52 0.5
1,663,494 - 0.1
1,663,516 - 0.6
1,663,649 - 1.0
1,663,936 + 1.0
1,663,941 + 0.3
1,664,078 - 13431 mRNA_5063 0.12 -0.1
1,664,079 - 13431 mRNA_5063 0.12 -0.2
1,664,087 - 13431 mRNA_5063 0.12 0.8
1,664,241 - 13431 mRNA_5063 0.20 -0.1
1,664,540 + 13431 mRNA_5063 0.37 1.1